Publications

A more complete list can be found on Google Scholar.

Peer-reviewed Articles

• C. Geniesse*, S. Chowdhury*, M. Saggar. NeuMapper: A Scalable Computational Framework for Multiscale Exploration of the Brain’s Dynamical Organization. Network Neuroscience, 2022. [code] (*equal contribution)

• T. Morris, E. Sue, C. Geniesse, W. Brieher, V. Tang. Synaptopodin is Required for Stress Fiber and Contractomere Assembly at the Epithelial Junction. J. Cell Biology, 2022.

• H. Xie, R. Beaty, S. Jahanikia, C. Geniesse, N. Sonalkar, M. Saggar. Spontaneous and Deliberate Modes of Creativity: Multitask Eigen-Connectivity Analysis Captures Latent Cognitive Modes During Creative Thinking. NeuroImage, 2021.

• J. Koehler Leman, [et al, including C. Geniesse]. Macromolecular Modeling and Design in Rosetta: Recent Methods and Frameworks. Nature Methods, 2020.

• Z. Miao, [et al, including C. Geniesse]. RNA-Puzzles Round IV: 3D Structure Predictions of Four Ribozymes and Two Aptamers. RNA, 2020.

• C. Geniesse, O. Sporns, G. Petri, M. Saggar. Generating Dynamical Neuroimaging Spatiotemporal Representations (DyNeuSR) Using Topological Data Analysis. Network Neuroscience, 2019. [code] [demos]

• Z. Wu, B. Ramsundar, E. Feinberg, J. Gomes, C. Geniesse, A. Pappu, K. Leswing, V. Pande. MoleculeNet: A Benchmark for Molecular Machine Learning. Chemical Science, 2018.

• A. Watkins, C. Geniesse, W. Kladwang, P. Zakrevsky, L. Jaeger, R. Das. Blind Prediction of Noncanonical RNA Structure at Atomic Accuracy. Science Advances, 2018.

• Z. Miao, [et al, including C. Geniesse]. RNA-Puzzles Round III: 3D RNA Structure Prediction of Five Riboswitches and One Ribozyme. RNA, 2017.

Book Chapters

• N. Sonalkar, S. Jahanikia, H. Xie, C. Geniesse, R. Ayub, R. Beaty, M. Saggar. Mining the Role of Design Reflection and Associated Brain Dynamics in Creativity. Design Thinking Research. Understanding Innovation. Springer, Cham, 2020.

Conference Abstracts

• E. Tran, C. Geniesse, E. Finn, M. Saggar. Linking Event Memories Formed During Naturalistic Narratives with Attentional Engagement and Emotion. Organization for Human Brain Mapping (OHBM) Annual Meeting, 2023.

• D. Haşegan, C. Geniesse, S. Chowdhury, M. Saggar. Deconstructing Mapper to Reveal the Brain’s Dynamic Organization. Computational Psychiatry Course, 2022.

• C. Geniesse, J. Bruno, H. Xie, S. Jahanikia, N. Sonalkar, M. Saggar. Examining Brain Dynamics Associated with Trait Rumination Using Video Self-Reflection. Society of Biological Psychiatry (SOBP) Annual Meeting, 2022.

• C. Geniesse*, S. Chowdhury*, M. Saggar. Exploring the Landscape of Brain Dynamics Using Topological Data Analysis. Organization for Human Brain Mapping (OHBM) Annual Meeting, 2020. (*equal contribution)